Introduction | Gene expression and microRNA target sites | CPNE1 expression and HapMap SNPs | Binding sites for NRSF | Downloading tracks from UCSC | Conclusion

Introduction | What is GMAP, GSNAP, and bam_tally? | Create a GmapGenome Object | Aligning with GSNAP | Using bam_tally | Creating a GmapGenome Package

Introduction | Color Schemes | Utilities | Bugs Report and Features Request | Acknowledgement | Session Information

1 Getting started | 2 Case study: building your first tracks | 3 Simple navigation | 4 Overview plots | 5 Link ranges to your data | 6 Miscellaneous | 7 Session Information